[BioNLP] Annotated corpora containing anatomical and disease mentions?

Phil Gooch philgooch at gmail.com
Fri Apr 27 07:49:51 EDT 2012


Hi Mariana

Many thanks for these links, these will be very useful, particularly the
resources at http://corpora.informatik.hu-berlin.de/

With best regards

Phil

On Fri, Apr 27, 2012 at 12:29 PM, Mariana Neves <
neves at informatik.hu-berlin.de> wrote:

>
> Dear Phil,
>
> we have recently made available the CellFinder corpus (to be presented at
> the LREC next month) which contains 10 full papers and anatomical
> annotations related to the stem cell domain. I guess there are also some
> body parts and tissues annotated in the GENIA corpus. Regarding diseases,
> there are some in the BioText corpus. All of them are available for
> visualization in our corpora repository and for download in the
> corresponding website, by clicking on the name of the corpus.
>
> http://corpora.informatik.hu-berlin.de
>
> Not (yet) included in our repository, you might want to have a look at the
> EBI corpus for disease (
> http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2352871/). The CALBC silver
> corpus which also contains diseases ( http://www.calbc.eu/).
>
> Although I am afraid none contains both diseases and anatomical
> annotations. I hope it helps you.
>
> Regards,
>
> Mariana
>
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